StochSS-Compute |release|
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StochSS-Compute is a compute delegation server for the `StochSS <https://github.com/StochSS>`_ family of stochastic simulation software. StochSS-Compute allows for one to run StochSS or GillesPy2 simulations on distributed cloud compute resources.

Getting a copy of GillesPy2
***************************

The latest version of GillesPy2 can be found on `PyPI <https://pypi.org/project/gillespy2>`_.  The source code is available on `GitHub <https://github.com/StochSS/GillesPy2>`_.  GillesPy2 is licensed under the GNU General Public License version 3.

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   <p style="width: 80%; margin: auto; padding: 0.5em; border: 1px solid purple"><a href="https://docs.google.com/forms/d/12tAH4f8CJ-3F-lK44Q9uQHFio_mGoK0oY829q5lD7i4/viewform"><b>Please register as a user!</b></a>  GillesPy2's development is funded by NIH grant 2R01EB014877, and to continue support, we need to prove GillesPy2 has users. <a href="https://docs.google.com/forms/d/12tAH4f8CJ-3F-lK44Q9uQHFio_mGoK0oY829q5lD7i4/viewform">Please fill out our short registration form!</a></p>
   <table><tr><td><b>
   <img width="20%" align="right" src="https://raw.githubusercontent.com/StochSS/GillesPy2/develop/.graphics/stochss-logo.png">
   <a href="https://docs.google.com/forms/d/12tAH4f8CJ-3F-lK44Q9uQHFio_mGoK0oY829q5lD7i4/viewform">PLEASE REGISTER AS A USER</a>, so that we can prove StochSS-Compute has many users when we seek funding to support development. StochSS-Compute is part of the <a href="http://www.stochss.org">StochSS</a> project.
   </td></tr></table>


Getting help
************

If you find any problem with StochSS-Compute or this documentation, please report it using `the GitHub issue tracker <https://github.com/StochSS/stochss-compute/issues>`_ for the project.  You can also contact the main author, `Matthew Dippel <https://github.com/mdip226>`_, directly with questions and suggestions.


Documentation
*************

.. toctree::
   :maxdepth: 2
   :caption: Getting started
   :name: sec-getting-started

   getting_started/installation/installation.rst
   getting_started/containers/docker.rst
   getting_started/basic_usage/basic_usage.rst

.. toctree::
   :maxdepth: 2
   :caption: Tutorials
   :name: sec-tutorials

   tutorials/docker/docker.rst
   tutorials/aws/aws.rst

.. toctree::
   :maxdepth: 3
   :caption: API reference

   classes/stochss_compute

Indices and tables
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* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`